GeneAnswers

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see GeneAnswers.

Integrated Interpretation of Genes


Bioconductor version: 3.9

GeneAnswers provides an integrated tool for biological or medical interpretation of the given one or more groups of genes by means of statistical test.

Author: Lei Huang, Gang Feng, Pan Du, Tian Xia, Xishu Wang, Jing, Wen, Warren Kibbe and Simon Lin

Maintainer: Lei Huang <lhuang7 at uchicago.edu> and Gang Feng <gilbertfeng at gmail.com>

Citation (from within R, enter citation("GeneAnswers")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GeneAnswers")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneAnswers")
GeneAnswers PDF R Script
GeneAnswers web-based visualization module PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataRepresentation, GraphsAndNetworks, Infrastructure, Software, Visualization
Version 2.26.0
In Bioconductor since BioC 2.5 (R-2.10) (14.5 years)
License LGPL (>= 2)
Depends R (>= 3.0.0), igraph, RCurl, annotate, Biobase(>= 1.12.0), methods, XML, RSQLite, MASS, Heatplus, RColorBrewer
Imports RBGL, annotate, downloader
System Requirements
URL
See More
Suggests GO.db, KEGG.db, reactome.db, biomaRt, AnnotationDbi, org.Hs.eg.db, org.Rn.eg.db, org.Mm.eg.db, org.Dm.eg.db, graph
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me InterMineR
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GeneAnswers_2.26.0.tar.gz
Windows Binary GeneAnswers_2.26.0.zip
Mac OS X 10.11 (El Capitan) GeneAnswers_2.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GeneAnswers
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GeneAnswers
Bioc Package Browser https://code.bioconductor.org/browse/GeneAnswers/
Package Short Url https://bioconductor.org/packages/GeneAnswers/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive