CRAN Package Check Results for Package otargen

Last updated on 2024-06-01 10:48:09 CEST.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	1.1.1	9.93	83.15	93.08	ERROR
r-devel-linux-x86_64-debian-gcc	1.1.1	6.10	60.91	67.01	OK
r-devel-linux-x86_64-fedora-clang	1.1.1			113.26	OK
r-devel-linux-x86_64-fedora-gcc	1.1.1			107.04	OK
r-devel-windows-x86_64	1.1.1	8.00	121.00	129.00	ERROR
r-patched-linux-x86_64	1.1.1	8.71	79.24	87.95	OK
r-release-linux-x86_64	1.1.1	5.15	79.28	84.43	OK
r-release-macos-arm64	1.1.1			99.00	OK
r-release-macos-x86_64	1.1.1			143.00	OK
r-release-windows-x86_64	1.1.1	9.00	123.00	132.00	OK
r-oldrel-macos-arm64	1.1.1			109.00	OK
r-oldrel-macos-x86_64	1.1.1			139.00	OK
r-oldrel-windows-x86_64	1.1.1	11.00	135.00	146.00	OK

Check Details

Version: 1.1.1
Check: tests
Result: ERROR Running ‘testthat.R’ [15s/68s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(otargen) > > test_check("otargen") \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [85ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [1s] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [18ms] \ Downloading data for ENSG00000163946 ... v Downloading data for ENSG00000163946 ... [580ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [243ms] \ Downloading data for ENSG00000143001 ... v Downloading data for ENSG00000143001 ... [339ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [311ms] \ Downloading data for ENSG00000141510 ... v Downloading data for ENSG00000141510 ... [489ms] \ Downloading data for ENSG00000163946 ... v Downloading data for ENSG00000163946 ... [300ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [344ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [106ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [281ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [17ms] \ Downloading data... v Downloading data... [117ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [135ms] \ Downloading data... v Downloading data... [162ms] \ Connecting to the Open Targets Genetics GrpahQL API... x Connecting to the Open Targets Genetics GrpahQL API... [137ms] \ Connecting to the Open Targets Genetics GraphQL API... v Connecting to the Open Targets Genetics GraphQL API... [19ms] \ Downloading data for 1_154453788_C_T ... v Downloading data for 1_154453788_C_T ... [358ms] \ Connecting to the Open Targets Genetics GraphQL API... v Connecting to the Open Targets Genetics GraphQL API... [108ms] \ Downloading data for rs55808324 ... v Downloading data for rs55808324 ... [401ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [15ms] \ Downloading data... v Downloading data... [129ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [18ms] \ Downloading data... x Downloading data... [154ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [16ms] \ Downloading data... v Downloading data... [146ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [15ms] \ Downloading the data... v Downloading the data... [108ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [18ms] \ Downloading the data... v Downloading the data... [118ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [16ms] \ Downloading data... v Downloading data... [129ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [15ms] \ Downloading data... v Downloading data... [1.3s] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [15ms] \ Downloading data... v Downloading data... [310ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [19ms] \ Downloading data... v Downloading data... [226ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [33ms] \ Downloading data for variant 1_55063514_G_A ... v Downloading data for variant 1_55063514_G_A ... [130ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [97ms] \ Downloading data for variant rs72698179 ... v Downloading data for variant rs72698179 ... [132ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [16ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [258ms] Selecting by Trait_reported_trimmed \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [24ms] \ Downloading data for ENSG00000167207 ... v Downloading data for ENSG00000167207 ... [261ms] \ Downloading data for ENSG00000096968 ... v Downloading data for ENSG00000096968 ... [361ms] \ Downloading data for ENSG00000138821 ... v Downloading data for ENSG00000138821 ... [267ms] \ Downloading data for ENSG00000125255 ... v Downloading data for ENSG00000125255 ... [253ms] Selecting by Trait_reported_trimmed \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [108ms] \ Downloading data for ENSG00000141510 ... v Downloading data for ENSG00000141510 ... [561ms] Selecting by Trait_reported_trimmed \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [272ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [250ms] \ Downloading data for ENSG00000163946 ... v Downloading data for ENSG00000163946 ... [304ms] \ Downloading data for ENSG00000141510 ... v Downloading data for ENSG00000141510 ... [569ms] Selecting by Trait_reported_trimmed \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [16ms] \ Downloading data for ENSG00000167207 ... v Downloading data for ENSG00000167207 ... [4.6s] \ Downloading data for ENSG00000096968 ... v Downloading data for ENSG00000096968 ... [4.9s] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [27ms] \ Downloading data for ENSG00000167207 ... v Downloading data for ENSG00000167207 ... [5s] \ Downloading data for ENSG00000096968 ... v Downloading data for ENSG00000096968 ... [4.7s] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [16ms] \ Downloading data... v Downloading data... [801ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [15ms] \ Downloading data for variant 14_87978408_G_A ... v Downloading data for variant 14_87978408_G_A ... [136ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [119ms] \ Downloading data for variant rs55808324 ... v Downloading data for variant rs55808324 ... [208ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [15ms] \ Downloading data... v Downloading data... [323ms] \ Connecting the database... v Connecting the database... [20ms] \ Downloading data... v Downloading data... [150ms] \ Connecting the database... v Connecting the database... [235ms] \ Downloading data... v Downloading data... [190ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [15ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [6.1s] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [199ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [5s] \ Downloading data for ENSG00000163946 ... x Downloading data for ENSG00000163946 ... [10.2s] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [20ms] \ Downloading data... v Downloading data... [166ms] \ Connecting to the Open Targets Genetics GraphQL API... v Connecting to the Open Targets Genetics GraphQL API... [32ms] \ Downloading data for GCST003044 , 14_88009660_C_T ... v Downloading data for GCST003044 , 14_88009660_C_T ... [1.3s] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [16ms] \ Downloading data... v Downloading data... [546ms] \ Connecting the database... v Connecting the database... [33ms] \ Downloading data... v Downloading data... [227ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [33ms] \ Downloading data... v Downloading data... [200ms] \ Connecting to the Open Targets Genetics GraphQL API... v Connecting to the Open Targets Genetics GraphQL API... [33ms] \ Downloading data... v Downloading data... [179ms] \ Connecting to the Open Targets Genetics GraphQL API... v Connecting to the Open Targets Genetics GraphQL API... [132ms] \ Downloading data... v Downloading data... [173ms] [ FAIL 1 | WARN 0 | SKIP 0 | PASS 78 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-studiesAndLeadVariantsForGeneByL2G.R:3:3'): test studiesAndLeadVariantsForGeneByL2G works ── Error: Bad Gateway (HTTP 502) Backtrace: ▆ 1. └─otargen::studiesAndLeadVariantsForGeneByL2G(...) at test-studiesAndLeadVariantsForGeneByL2G.R:3:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 78 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.1.1
Check: tests
Result: ERROR Running 'testthat.R' [49s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(otargen) > > test_check("otargen") \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [41ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [682ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [10ms] \ Downloading data for ENSG00000163946 ... v Downloading data for ENSG00000163946 ... [300ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [182ms] \ Downloading data for ENSG00000143001 ... v Downloading data for ENSG00000143001 ... [154ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [163ms] \ Downloading data for ENSG00000141510 ... | Downloading data for ENSG00000141510 ... v Downloading data for ENSG00000141510 ... [549ms] \ Downloading data for ENSG00000163946 ... v Downloading data for ENSG00000163946 ... [257ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [161ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [56ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [170ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data... v Downloading data... [56ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [54ms] \ Downloading data... v Downloading data... [76ms] \ Connecting to the Open Targets Genetics GrpahQL API... x Connecting to the Open Targets Genetics GrpahQL API... [57ms] \ Connecting to the Open Targets Genetics GraphQL API... v Connecting to the Open Targets Genetics GraphQL API... [11ms] \ Downloading data for 1_154453788_C_T ... v Downloading data for 1_154453788_C_T ... [210ms] \ Connecting to the Open Targets Genetics GraphQL API... v Connecting to the Open Targets Genetics GraphQL API... [62ms] \ Downloading data for rs55808324 ... v Downloading data for rs55808324 ... [134ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [9ms] \ Downloading data... v Downloading data... [65ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [9ms] \ Downloading data... x Downloading data... [58ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [9ms] \ Downloading data... v Downloading data... [89ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [11ms] \ Downloading the data... v Downloading the data... [52ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [9ms] \ Downloading the data... v Downloading the data... [56ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [9ms] \ Downloading data... v Downloading data... [76ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [11ms] \ Downloading data... v Downloading data... [577ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [11ms] \ Downloading data... v Downloading data... [190ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [10ms] \ Downloading data... v Downloading data... [139ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [12ms] \ Downloading data for variant 1_55063514_G_A ... v Downloading data for variant 1_55063514_G_A ... [77ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [56ms] \ Downloading data for variant rs72698179 ... v Downloading data for variant rs72698179 ... [76ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [9ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [179ms] Selecting by Trait_reported_trimmed \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [7ms] \ Downloading data for ENSG00000167207 ... v Downloading data for ENSG00000167207 ... [164ms] \ Downloading data for ENSG00000096968 ... v Downloading data for ENSG00000096968 ... [316ms] \ Downloading data for ENSG00000138821 ... v Downloading data for ENSG00000138821 ... [173ms] \ Downloading data for ENSG00000125255 ... v Downloading data for ENSG00000125255 ... [123ms] Selecting by Trait_reported_trimmed \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [64ms] \ Downloading data for ENSG00000141510 ... v Downloading data for ENSG00000141510 ... [457ms] Selecting by Trait_reported_trimmed \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [161ms] \ Downloading data for ENSG00000169174 ... v Downloading data for ENSG00000169174 ... [163ms] \ Downloading data for ENSG00000163946 ... | Downloading data for ENSG00000163946 ... v Downloading data for ENSG00000163946 ... [240ms] \ Downloading data for ENSG00000141510 ... v Downloading data for ENSG00000141510 ... [463ms] Selecting by Trait_reported_trimmed \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [10ms] \ Downloading data for ENSG00000167207 ... v Downloading data for ENSG00000167207 ... [4.7s] \ Downloading data for ENSG00000096968 ... v Downloading data for ENSG00000096968 ... [4.7s] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [14ms] \ Downloading data for ENSG00000167207 ... v Downloading data for ENSG00000167207 ... [6s] \ Downloading data for ENSG00000096968 ... v Downloading data for ENSG00000096968 ... [6.3s] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [12ms] \ Downloading data... v Downloading data... [822ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [10ms] \ Downloading data for variant 14_87978408_G_A ... v Downloading data for variant 14_87978408_G_A ... [101ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [67ms] \ Downloading data for variant rs55808324 ... v Downloading data for variant rs55808324 ... [83ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [10ms] \ Downloading data... v Downloading data... [129ms] \ Connecting the database... v Connecting the database... [9ms] \ Downloading data... v Downloading data... [90ms] \ Connecting the database... v Connecting the database... [111ms] \ Downloading data... v Downloading data... [94ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [11ms] \ Downloading data for ENSG00000169174 ... x Downloading data for ENSG00000169174 ... [10.1s] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [11ms] \ Downloading data... v Downloading data... [56ms] \ Connecting to the Open Targets Genetics GraphQL API... v Connecting to the Open Targets Genetics GraphQL API... [8ms] \ Downloading data for GCST003044 , 14_88009660_C_T ... v Downloading data for GCST003044 , 14_88009660_C_T ... [1.6s] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [11ms] \ Downloading data... v Downloading data... [585ms] \ Connecting the database... v Connecting the database... [11ms] \ Downloading data... v Downloading data... [184ms] \ Connecting to the Open Targets Genetics GrpahQL API... v Connecting to the Open Targets Genetics GrpahQL API... [11ms] \ Downloading data... v Downloading data... [116ms] \ Connecting to the Open Targets Genetics GraphQL API... v Connecting to the Open Targets Genetics GraphQL API... [13ms] \ Downloading data... v Downloading data... [102ms] \ Connecting to the Open Targets Genetics GraphQL API... v Connecting to the Open Targets Genetics GraphQL API... [77ms] \ Downloading data... v Downloading data... [87ms] [ FAIL 1 | WARN 0 | SKIP 0 | PASS 78 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-studiesAndLeadVariantsForGeneByL2G.R:2:3'): test studiesAndLeadVariantsForGeneByL2G works ── Error: Bad Gateway (HTTP 502) Backtrace: ▆ 1. └─otargen::studiesAndLeadVariantsForGeneByL2G(gene = "ENSG00000169174") at test-studiesAndLeadVariantsForGeneByL2G.R:2:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 78 ] Error: Test failures Execution halted Flavor: r-devel-windows-x86_64