ExperimentHub

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ExperimentHub.

Client to access ExperimentHub resources


Bioconductor version: 3.9

This package provides a client for the Bioconductor ExperimentHub web resource. ExperimentHub provides a central location where curated data from experiments, publications or training courses can be accessed. Each resource has associated metadata, tags and date of modification. The client creates and manages a local cache of files retrieved enabling quick and reproducible access.

Author: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("ExperimentHub")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ExperimentHub")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ExperimentHub")
Creating An ExperimentHub Package HTML R Script
ExperimentHub: Access the ExperimentHub Web Service HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DataImport, GUI, Infrastructure, Software, ThirdPartyClient
Version 1.10.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License Artistic-2.0
Depends methods, BiocGenerics(>= 0.15.10), AnnotationHub(>= 2.15.9), BiocFileCache(>= 1.5.1)
Imports utils, S4Vectors, BiocManager, curl, rappdirs
System Requirements
URL
See More
Suggests knitr, BiocStyle
Linking To
Enhances ExperimentHubData
Depends On Me adductomicsR, allenpvc, alpineData, bodymapRat, brainImageRdata, CellMapperData, curatedAdipoChIP, curatedMetagenomicData, FlowSorted.Blood.EPIC, FlowSorted.CordBloodCombined.450k, HDCytoData, HumanAffyData, mcsurvdata, MetaGxBreast, MetaGxOvarian, MetaGxPancreas, NestLink, restfulSEData, SeqSQC, sesameData, tcgaWGBSData.hg19
Imports Me adductData, brainImageR, chipseqDBData, CLLmethylation, CopyNeutralIMA, curatedTCGAData, DuoClustering2018, ENmix, ExperimentHubData, GSEABenchmarkeR, HarmonizedTCGAData, HCAData, HMP16SData, restfulSE, TabulaMurisData, TENxBrainData, TENxPBMCData
Suggests Me ANF, AnnotationHub, celaref, celarefData, CellMapper, DEqMS, GSE62944, HDF5Array, tissueTreg
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ExperimentHub_1.10.0.tar.gz
Windows Binary ExperimentHub_1.10.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) ExperimentHub_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ExperimentHub
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ExperimentHub
Bioc Package Browser https://code.bioconductor.org/browse/ExperimentHub/
Package Short Url https://bioconductor.org/packages/ExperimentHub/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.9 Source Archive